species:   Rhsol
pid:       PID0516
parent:    Rhi-milR-168
paralog:   
locus:     KB317711.1:275026-275119
matures:   ['UUGGCUUGAAUAUCUUGGUGAUGG', 'GUUCCAAGUUCAUUCUUUCU']
srr:       SRR1994875
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994875.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994875.cram KB317711.1:275026-275119

19 out of bounds
9 alignments
9 proper strand
9 stranded perfect matches

         *************************                       ****************************         
UAGGUGAGUUGACGUUCCAAGUUCAUUCUUUCUAUCCUCAAUAUGAUGUUUGUGAGGCAUUUGGCUUGAAUAUCUUGGUGAUGGAGCCCAUCGC
..((((.(((..(((((((((((((..((......(((((..(......)..))))).....))..))))...))))).)))).))).))))..
------------------------------------------------------------UUGGCUUGAAUAUCUUGGUGAUGG---------- l=24 a=0 c
-------------GUUCCAAGUUCAUUCUUUCU------------------------------------------------------------- l=20 a=0 c*
-----------------------------------------------------------UUUGGCUUGAAUAUCUUGGUGAUGGA--------- l=26 a=2 ma
-----------ACGUUCCAAGUUCAUUCUUUCUA------------------------------------------------------------ l=23 a=0 ma*

--------------------------------------CAAUAUGAUGUUUGUGAGGCAU---------------------------------- l=22 a=1 
---------------------------------------------------------CAUUUGGCUUGAAUAUCUUGGUGAUGG---------- l=27 a=1 
---------------------------------------------------------CAUUUGGCUUGAAUAUCUUGGUGAUGGA--------- l=28 a=1 
----------------------------------------------------------AUUUGGCUUGAAUAUCUUGGUGAUGG---------- l=26 a=1 
----------------------------------------------------------AUUUGGCUUGAAUAUCUUGGUGAUGGA--------- l=27 a=1 
-----------------------------------------------------------UUUGGCUUGAAUAUCUUGGUGAUG----------- l=24 a=1 
-----------------------------------------------------------UUUGGCUUGAAUAUCUUGGUGAUGGA--------- l=26 a=2 (ma)
------------------------------------------------------------UUGGCUUGAAUAUCUUGGUGAUGGAG-------- l=26 a=1 

mb-01011
ax-1001001
ku-01
ss-101011101110
fn-111
